Latest Publications:
Resistance to Germline RNAi in a Caenorhabditis elegans Wild Isolate Exhibits Complexity and Non-Additivity - G3

Design and Construction of Recombinant Inbred Lines - Methods in Molecular Biology
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Pollard DA, Rockman MV, Resistance to Germline RNAi in a Caenorhabditis elegans Wild Isolate Exhibits Complexity and Non-Additivity. G3, 2013. g3.113.005785.
[Download PDF (814 Kb)] [G3] [PubMed]

Pollard DA, Design and Construction of Recombinant Inbred Lines. Methods in Molecular Biology, 2012. Chapter 3 of Quantitative Trait Loci (QTL) : Methods and Protocols. Springer 1:871.
[Download PDF (162 Kb)] [Methods in Molecular Biology] [PubMed]

Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol. 2008 Feb;6(2):e27.
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Pollard DA, Evolution of cis-regulatory sequences in Drosophila: a systematic approach. University of California Library, 2007.
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Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Drosophila 12 Genomes Consortium, Evolution of genes and genomes on the Drosophila phylogeny. Nature, 2007. 450(7167):203-18.
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Pollard DA, Iyer VN, Moses AM, Eisen MB, Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting. PLoS Genetics, 2006. 2:10.
[Download PDF (696 Kb)] [Download Best Trees Table (558 Kb)] [PLoS Genetics] [PubMed] [Faculty of 1000]

Moses AM, Pollard DA, Nix DA, Iyer VN, Li X, Biggin MD, Eisen MB, Large-scale turnover of functional transcription factor binding sites in Drosophila. PLoS Computational Biology, 2006. 2:10.
[Download PDF (940 Kb)] [PLoS Computational Biology] [PubMed]

The Honeybee Genome Sequencing Consortium, Insights into social insects from the genome of the honeybee Apis mellifera. Nature, 2006. 443, 931-949.
[Download PDF (4.5 Mb)] [Nature] [PubMed]

Pollard DA, Moses AM, Iyer VN, Eisen MB, Detecting the Limits of Regulatory Element Conservation and Divergence Estimation Using Pairwise and Multiple Alignments. BMC Bioinformatics, 2006. 7:376.
[Download PDF (508 Kb)] [Software] [BMC Bioinformatics] [PubMed]

Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB, MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. Genome Biology, 2004. 5(12): R98.
[Download PDF (696 Kb)] [Genome Biology] [PubMed]

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB, Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics, 2004. 5(1): 6.
[Download PDF (580 Kb)] [Supplement] [BMC Bioinformatics] [PubMed]

Fruman DA, Mauvais-Jarvis F, Pollard DA, Yballe CM, Brazil D, Bronson RT, Kahn CR, Cantley LC, Hypoglycaemia, liver necrosis and perinatal death in mice lacking all isoforms of phosphoinositide 3-kinase p85 alpha. Nature Genetics, 2000. 26(3): p. 379-82.
[Download PDF (612 Kb)] [Nature Genetics] [PubMed]